bbp::sonata::SimulationConfig::Run Struct Reference

#include <config.h>

Public Types
enum class	IntegrationMethod { invalid = -1 , euler , crank_nicolson , crank_nicolson_ion }

Public Attributes
double	tstop {}
	Biological simulation end time in milliseconds.
double	dt {}
	Integration step duration in milliseconds.
int	randomSeed {}
	Random seed.
double	spikeThreshold = DEFAULT_spikeThreshold
	The spike detection threshold. Default is -30mV.
IntegrationMethod	integrationMethod = DEFAULT_IntegrationMethod
int	stimulusSeed = DEFAULT_stimulusSeed
int	ionchannelSeed = DEFAULT_ionchannelSeed
	A non-negative integer used for seeding stochastic ion channels, default is 0.
int	minisSeed = DEFAULT_minisSeed
int	synapseSeed = DEFAULT_synapseSeed
	A non-negative integer used for seeding stochastic synapses, default is 0.
std::string	electrodesFile
	Filename that contains the weights for the LFP calculation.

Static Public Attributes
static constexpr double	DEFAULT_spikeThreshold = -30.0
static constexpr IntegrationMethod	DEFAULT_IntegrationMethod = IntegrationMethod::euler
static constexpr int	DEFAULT_stimulusSeed = 0
static constexpr int	DEFAULT_ionchannelSeed = 0
static constexpr int	DEFAULT_minisSeed = 0
static constexpr int	DEFAULT_synapseSeed = 0

Detailed Description

Parameters defining global simulation settings for spike reports

Member Data Documentation

integrationMethod

IntegrationMethod bbp::sonata::SimulationConfig::Run::integrationMethod = DEFAULT_IntegrationMethod

Selects the NEURON/CoreNEURON integration method. This parameter sets the NEURON global variable h.secondorder, default is "euler".

minisSeed

int bbp::sonata::SimulationConfig::Run::minisSeed = DEFAULT_minisSeed

A non-negative integer used for seeding the Poisson processes that drives the minis, default is 0.

stimulusSeed

int bbp::sonata::SimulationConfig::Run::stimulusSeed = DEFAULT_stimulusSeed

A non-negative integer used for seeding noise stimuli and any other future stochastic stimuli, default is 0.