#include <config.h>

Public Types
enum	SpikeLocation { invalid = -1, soma, AIS }

Public Member Functions
std::set< std::string >	listModificationNames () const
	Returns the names of the modifications.

const Modification &	getModification (const std::string &name) const

Public Attributes
double	celsius = DEFAULT_celsius
	Temperature of experiment. Default is 34.0.

double	vInit = DEFAULT_vInit
	Initial membrane voltage in mV. Default is -80.

SpikeLocation	spikeLocation = DEFAULT_spikeLocation
	The spike detection location. Can be either ‘soma’ or 'AIS'. Default is 'soma'.

nonstd::optional< double >	extracellularCalcium {nonstd::nullopt}

bool	randomizeGabaRiseTime = DEFAULT_randomizeGabaRiseTime

std::unordered_map< std::string, std::unordered_map< std::string, variantValueType > >	mechanisms

ModificationMap	modifications

Static Public Attributes
static constexpr double	DEFAULT_celsius = 34.0

static constexpr double	DEFAULT_vInit = -80.0

static constexpr SpikeLocation	DEFAULT_spikeLocation = SpikeLocation::soma

static constexpr bool	DEFAULT_randomizeGabaRiseTime = false

Detailed Description

Parameters defining global experimental conditions.

Member Function Documentation

◆ getModification()

const Modification& bbp::sonata::SimulationConfig::Conditions::getModification ( const std::string & name ) const

Returns the given modification parameters

Exceptions

SonataError if the given modification name does not exist

Member Data Documentation

◆ extracellularCalcium

nonstd::optional<double> bbp::sonata::SimulationConfig::Conditions::extracellularCalcium {nonstd::nullopt}

Extracellular calcium concentration, being applied to the synapse uHill parameter in order to scale the U parameter of synapses. Default is None.

◆ mechanisms

std::unordered_map<std::string, std::unordered_map<std::string, variantValueType> > bbp::sonata::SimulationConfig::Conditions::mechanisms

Properties to assign values to variables in synapse MOD files. The format is a dictionary with keys being the SUFFIX names and values being dictionaries of variables' names and values.

◆ modifications

ModificationMap bbp::sonata::SimulationConfig::Conditions::modifications

Collection of dictionaries with each member decribing a modification that mimics experimental manipulations to the circuit.

◆ randomizeGabaRiseTime

bool bbp::sonata::SimulationConfig::Conditions::randomizeGabaRiseTime = DEFAULT_randomizeGabaRiseTime

Enable legacy behavior to randomize the GABA_A rise time in the helper functions. Default is false

Public Types

Public Member Functions

Public Attributes

Static Public Attributes