Index A | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | U | V | W A afferent_edges() (libsonata.EdgePopulation method) attribute_names (libsonata.EdgePopulation property) (libsonata.NodePopulation property) B base_path (libsonata.SimulationConfig property) beta_features (libsonata.SimulationConfig property) C cells (libsonata.SimulationConfig.Report property) celsius (libsonata.SimulationConfig.Conditions property) CircuitConfig (class in libsonata) CircuitConfigStatus (class in libsonata) compartment_set (libsonata.SimulationConfig.Report property) compartment_sets_file (libsonata.SimulationConfig property) compartments (libsonata.SimulationConfig.Report property) conditions (libsonata.SimulationConfig property) config_status (libsonata.CircuitConfig property) connecting_edges() (libsonata.EdgePopulation method) connection_overrides() (libsonata.SimulationConfig method) D data (libsonata.ElectrodeScalingFactors property) data_units (libsonata.ElementReportPopulation property) (libsonata.SomaReportPopulation property) delay (libsonata.SimulationConfig.ConnectionOverride property) dt (libsonata.SimulationConfig.Report property) (libsonata.SimulationConfig.Run property) dynamics_attribute_names (libsonata.EdgePopulation property) (libsonata.NodePopulation property) E edge_population() (libsonata.CircuitConfig method) edge_population_properties() (libsonata.CircuitConfig method) EdgePopulation (class in libsonata) EdgeStorage (class in libsonata) efferent_edges() (libsonata.EdgePopulation method) electrode_names (libsonata.ElectrodePopulation property) electrode_positions (libsonata.ElectrodePopulation property) electrode_types (libsonata.ElectrodePopulation property) ElectrodePopulation (class in libsonata) ElectrodeReader (class in libsonata) electrodes (libsonata.ElectrodeScalingFactors property) electrodes_file (libsonata.SimulationConfig.Report property) ElectrodeScalingFactors (class in libsonata) ElementDataFrame (class in libsonata) ElementReportPopulation (class in libsonata) ElementReportReader (class in libsonata) enabled (libsonata.SimulationConfig.Report property) end_time (libsonata.SimulationConfig.Report property) enumeration_names (libsonata.EdgePopulation property) (libsonata.NodePopulation property) enumeration_values() (libsonata.EdgePopulation method) (libsonata.NodePopulation method) expanded_json (libsonata.SimulationConfig property) extracellular_calcium (libsonata.SimulationConfig.Conditions property) F file_name (libsonata.SimulationConfig.Report property) flat_size (libsonata.Selection property) flatten() (libsonata.Selection method) from_file() (libsonata.CircuitConfig static method) (libsonata.NodeSets static method) (libsonata.SimulationConfig static method) G get() (libsonata.ElectrodePopulation method) (libsonata.ElementReportPopulation method) (libsonata.SomaReportPopulation method) (libsonata.SpikePopulation method) get_attribute() (libsonata.EdgePopulation method) (libsonata.NodePopulation method) get_dict() (libsonata.SpikePopulation method) get_dynamics_attribute() (libsonata.EdgePopulation method) (libsonata.NodePopulation method) get_enumeration() (libsonata.EdgePopulation method) (libsonata.NodePopulation method) get_node_id_element_id_mapping() (libsonata.ElementReportPopulation method) (libsonata.SomaReportPopulation method) get_node_ids() (libsonata.ElementReportPopulation method) (libsonata.SomaReportPopulation method) get_population_names() (libsonata.ElementReportReader method) (libsonata.SomaReportReader method) (libsonata.SpikeReader method) I ids (libsonata.ElectrodeScalingFactors property) input() (libsonata.SimulationConfig method) integration_method (libsonata.SimulationConfig.Run property) ionchannel_seed (libsonata.SimulationConfig.Run property) L libsonata module list_input_names (libsonata.SimulationConfig property) list_report_names (libsonata.SimulationConfig property) log_file (libsonata.SimulationConfig.Output property) M match_values() (libsonata.NodePopulation method) materialize() (libsonata.NodeSets method) mechanisms (libsonata.SimulationConfig.Conditions property) metadata (libsonata.SimulationConfig property) minis_seed (libsonata.SimulationConfig.Run property) modifications() (libsonata.SimulationConfig.Conditions method) modoverride (libsonata.SimulationConfig.ConnectionOverride property) module libsonata N name (libsonata.EdgePopulation property) (libsonata.NodePopulation property) (libsonata.SimulationConfig.ConnectionOverride property) names (libsonata.NodeSets property) network (libsonata.SimulationConfig property) neuromodulation_dtc (libsonata.SimulationConfig.ConnectionOverride property) neuromodulation_strength (libsonata.SimulationConfig.ConnectionOverride property) node_ids (libsonata.ElectrodePopulation property) node_population() (libsonata.CircuitConfig method) node_population_properties() (libsonata.CircuitConfig method) node_set (libsonata.SimulationConfig property) node_sets_file (libsonata.SimulationConfig property) NodePopulation (class in libsonata) NodeSets (class in libsonata) NodeStorage (class in libsonata) number_of_electrodes (libsonata.ElectrodePopulation property) O open_population() (libsonata.EdgeStorage method) (libsonata.ElectrodeReader method) (libsonata.NodeStorage method) output (libsonata.SimulationConfig property) output_dir (libsonata.SimulationConfig.Output property) P population_names (libsonata.EdgeStorage property) (libsonata.ElectrodeReader property) (libsonata.NodeStorage property) R random_seed (libsonata.SimulationConfig.Run property) randomize_gaba_rise_time (libsonata.SimulationConfig.Conditions property) ranges (libsonata.Selection property) referenced_populations() (libsonata.NodeSets method) report() (libsonata.SimulationConfig method) run (libsonata.SimulationConfig property) S scaling (libsonata.SimulationConfig.Report property) sections (libsonata.SimulationConfig.Report property) select_all() (libsonata.EdgePopulation method) (libsonata.NodePopulation method) Selection (class in libsonata) SimulationConfig (class in libsonata) SimulationConfig.Conditions (class in libsonata) SimulationConfig.Conditions.SpikeLocation (class in libsonata) SimulationConfig.ConnectionOverride (class in libsonata) SimulationConfig.Output (class in libsonata) SimulationConfig.Output.SpikesSortOrder (class in libsonata) SimulationConfig.Report (class in libsonata) SimulationConfig.Report.Compartments (class in libsonata) SimulationConfig.Report.Scaling (class in libsonata) SimulationConfig.Report.Sections (class in libsonata) SimulationConfig.Report.Type (class in libsonata) SimulationConfig.Run (class in libsonata) SimulationConfig.Run.IntegrationMethod (class in libsonata) SimulationConfig.SimulatorType (class in libsonata) size (libsonata.EdgePopulation property) (libsonata.NodePopulation property) SomaDataFrame (class in libsonata) SomaReportPopulation (class in libsonata) SomaReportReader (class in libsonata) SonataError sorted (libsonata.ElementReportPopulation property) (libsonata.SomaReportPopulation property) sorting (libsonata.SpikePopulation property) source (libsonata.EdgePopulation property) (libsonata.SimulationConfig.ConnectionOverride property) source_node() (libsonata.EdgePopulation method) source_nodes() (libsonata.EdgePopulation method) spike_location (libsonata.SimulationConfig.Conditions property) spike_threshold (libsonata.SimulationConfig.Run property) SpikePopulation (class in libsonata) SpikeReader (class in libsonata) spikes_file (libsonata.SimulationConfig.Output property) spikes_sort_order (libsonata.SimulationConfig.Output property) spont_minis (libsonata.SimulationConfig.ConnectionOverride property) start_time (libsonata.SimulationConfig.Report property) stimulus_seed (libsonata.SimulationConfig.Run property) synapse_configure (libsonata.SimulationConfig.ConnectionOverride property) synapse_delay_override (libsonata.SimulationConfig.ConnectionOverride property) synapse_seed (libsonata.SimulationConfig.Run property) T target (libsonata.EdgePopulation property) (libsonata.SimulationConfig.ConnectionOverride property) target_node() (libsonata.EdgePopulation method) target_nodes() (libsonata.EdgePopulation method) target_simulator (libsonata.SimulationConfig property) time_units (libsonata.ElementReportPopulation property) (libsonata.SomaReportPopulation property) (libsonata.SpikePopulation property) times (libsonata.ElementReportPopulation property) (libsonata.SomaReportPopulation property) (libsonata.SpikePopulation property) toJSON() (libsonata.NodeSets method) tstop (libsonata.SimulationConfig.Run property) type (libsonata.SimulationConfig.Report property) U unit (libsonata.SimulationConfig.Report property) update() (libsonata.NodeSets method) V v_init (libsonata.SimulationConfig.Conditions property) variable_name (libsonata.SimulationConfig.Report property) W weight (libsonata.SimulationConfig.ConnectionOverride property) write_indices() (libsonata.EdgePopulation static method)
